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Transcript for Open Hardware for Science Part 2

A event log for Open Hardware for Science

In this chat we'll look at some of the ways that open hardware has made science equipment more accessible

sophi-kravitzSophi Kravitz 05/11/2018 at 19:540 Comments

Ashwin K Whitchurch3:40 PM
They just check for the proper Hardware and software licenses and make sure they are properly documented, I would imagine enforcing them would be a totally different ball game

kelu1243:41 PM
@Sophi Kravitz  I was asking this having the reliability aspect in mind (which was answered before) - in the sense that building trust and quality feeling with your users may be difficult.. but it is essential.

do any of you feel @Lex Kravitz @Ashwin K Whitchurch @Laura Cox @Sanworks that reliablity is more questioned because your product is open source or because you're doing research with open source hardware?

Lex Kravitz3:42 PM
@kelu124 I agree completely! I think it's going to be difficult for a 3rd party to certify that a device works as it should or produces reliable data. I've found that kind of feedback comes from users trying the devices

Ashwin K Whitchurch3:43 PM
I feel, after my discussion with a few people in science, they're unable to visualize how a $20000 pieces of equipment can be replaced with something that costs $200

maybe you should put a higher price tag on it @Ashwin K Whitchurch ?

Ashwin K Whitchurch3:44 PM
@Sophi Kravitz  That would definitely work !

Thomas Shaddack3:44 PM
@Laura Cox by chance, is the low-level communication to the lab-bots' positioning systems in standard g-code?

LOL!

Lex Kravitz3:44 PM
@Sophi Kravitz  I have met people who just won't use anything that's not one specific brand, because they are stuck in their ways. There is a lot of this in science, but I haven't met people who criticize something for being open-source, or hand-made

Next question is from @Shah Selbe : Curious about any mechanisms or ideas around bringing open science hardware and citizen science into more mainstream science and get rid of the stigma associated with it. Particularly around calibration and data verification/validation...

Seems like everyone is interested in calibration!

kelu1243:46 PM
@Ashwin K Whitchurch I have the same issue with pricing.. even when lab suppliers sell something in 1000s$, and you come up with something in 100s, they wonder about reliability..

Ashwin K Whitchurch3:47 PM
@kelu124 yes, but i may be generalizing the problem too much, but this is true of most research labs

Ashwin K Whitchurch3:48 PM
I guess the reliability, calibration, price and patents issues are all related

Thomas Shaddack3:48 PM
@Lex Kravitz thought re sterilization... what about using materials that are oligodynamic, that self-sterilize their surfaces by e.g. silver or copper ions? (also, how to assess the effect of such materials, e.g. brass- or copper-filled printing filament?)

Lex Kravitz3:48 PM
@Shah Selbe I think websites like this, Github, etc are doing a lot to remove the stigma around citizen science. I find scientific journals to be inadequate for documenting and disseminating hardware - it's just not a great format for describing code and devices. So we're using Hackaday.io to document projects. I think this becomes a mechanism for driving interaction between communities that otherwise don't interact much. It would be great to think of ways to foster/engineer more formal interactions too.

Laura Cox3:48 PM
Good question! @Sophi Kravitz  We basically utilize data to show reliability like any other company. For our pipetting robot we have extensively tested our hardware and found it to have a lifetime of heavy use to be ~ 4 years without needing extensive maintenance. Our positioning system's accuracy can be seen both by the hardware we use (which is opensource) and users can re-calibrate any time they would like very easily. As for our pipettes, we created a whitepaper so users can see the accuracy as well as test out the exact same protocol on their own.

Sophi Kravitz: Thanks for all the great responses so far!

Next question is from @Andre Maia Chagas :Do you think, with all the open science efforts going on, that we need to make grant committees and other institutions give more attention to hardware? (I think science will only be truly open once people can actually do experiments everywhere ) It never gets mentioned by open science people

Thomas Shaddack3:50 PM
...indeed. sci journals articles are often rather skimpy about the equipment, even the one the researchers made and are writing about. and then the journals would want tens of bucks to just access the tell-you-nothing article. thank gods for sci-hub!

Laura Cox3:50 PM
Similar to @Ashwin K Whitchurch we mainly find that people question our reliability because of the price tag as compared with other automated liquid handling devices

Lex Kravitz3:50 PM
@Thomas Shaddack That's a cool idea, but I doubt the vets would find it useful. They are a bit more "checklist" about these things, but luckily there are approved protocols for sterilizing items that come in contact with mice that can't be autoclaved. So we got approval just to wipe them down with ethanol. We also can do gas sterilization if they made us do that but it's annoying so I'd much rather just wipe them down!

Thomas Shaddackwhat about sterilization with 30% hydrogen peroxide mist? (could the ultrasound misters be useful here?)

Lex Kravitz@Laura Cox Are these people convinced by your data?

Thomas Shaddack@Lex Kravitz also, could there be some materials that'd indicate by e.g. color change the presence of microorganisms? some indicator dye bound to the polymer and sensitive to some markers of their metabolism?

Lex Kravitz@Thomas Shaddack There are established gas sterilization methods - Ethylene Oxide is common in hospitals. I'm not sure if hydrogen peroxide would work.

Laura CoxI believe so. We certainly haven't had it negatively impact us :) We also highly encourage our customers to try out the experiment we used ourselves (photometric and gravimetric testing)

Andre Maia Chagas@Thomas Shaddack and @Lex Kravitz : this is very interesting indeed, researchers need to get out of the tower and due proper interaction/collaboration with non-academics. But at the same time, one needs to keep playing the publish or perish game... (until we can finally get rid of it...)

Some resources for spreading hardware in the academic setting (which you probably already know):

https://channels.plos.org/open-source-toolkit

https://openhardware.metajnl.com/about/

https://www.journals.elsevier.com/hardwarex

Lex Kravitz@Laura Cox That's great! Yeah I find many scientists can be rigid about specific brands, but ultimately they respect data. If not you probably don't want to work with them too....

Thomas Shaddack3:54 PM
ethylene oxide is... a bit too explosive for my tastes. i heard about the 30% hp as an alternative method somewhere.

Sophi Kravitz: Our last question for today is about community and is from @Mark Sporleder : I'm currently in development of an environmental iot sensor device network with market towards scientific community. Am weighing options of having devices open source hardware/software or licensed. Will likely be kits requiring assembly at lower cost and open source to a degree. Looking to build an online community for sensor data sharing while making this into a profitable small business. Any suggestions?

Laura CoxYes definitely @Lex Kravitz that's why open-sourced devices and software are so important because it makes recreating experiments easier

Andre Maia Chagas: Hi @Tobias Wenzel ! Nice to see you here too!

Lex Kravitz@Mark Sporleder Wow that sounds extremely useful. I have a lot of experience in this actually as my lab has also been developing an environmental IoT device (raise your hand if you are too!). There are many pieces of commercial IoT hardware that do this sort of thing, and so I think that aspect of a system like this is solved many times over and may not need more innovation. The challenge is sharing data and getting the online community engagement. Unfortunately I don't have any advice on how to be profitable :)

Tobias Wenzel3:59 PM
Hi @Andre Maia Chagas, same here! Better late then never. I try to join #GOSH activities where I can to promote good Open Hardware documentation and publication ;-)

If you're just coming in now (hi @Tobias Wenzel !) you can catch up via transcript: https://hackaday.io/event/157820-open-hardware-for-science

Lex Kravitz4:00 PM
@Mark Sporleder Some info on our project here, we plan to release more documentation very soon, just working on a new PCB design: https://www.niddk.nih.gov/research-funding/technology-advancement-transfer/research-materials-licensing/mios-better-animal-care-better-research

Mark Sporleder4:01 PM
Am aiming specificily to underwater in similar fashion to how openrov has built a large community with like device.

Mark SporlederBy open source am considering building kit and enclosures but having documentation so that additional sensors could be networked or wired to existing system.

Lex Kravitz4:03 PM
In my opinion, I would put your efforts into building the community, and finding out what's missing from the commercial solutions for your target audience. I think the challenges will be in data sharing and community engagement/support, more so than building the actual devices.

Lex Kravitz4:04 PM
I haven't heard of many underwater solutions so you may be able to provide something novel to people who need that

Mark Sporleder4:04 PM
Would publications from institutions whom have worked with this device be a strong point for additional users or institutions to want to buy it?

Tobias Wenzel4:05 PM
Thanks @Sophi Kravitz, I am trying to do just that. Short intro: I am editor in chief of the Open Access Journal 'Journal of Open Hardware' https://openhardware.metajnl.com/articles/10.5334/joh.3/ and co-founder of DocuBricks http://docubricks.com/search.jsp. I am also a scientist and build many open projects myself.

nice to meet you!

Lex Kravitz4:05 PM
I believe so - scientists like to see peer reviewed publications, so it can be a boost if your device is being used in these

Lex Kravitz4:06 PM
This taps into the community engagement as well - if you create something and someone learns something useful with it, it's likely that others may want to replicate their work or use the device for other experiments.

kelu1244:06 PM
hi @Tobias Wenzel, glad to see you there. Would be good to see some hackaday science projects in the Journal of Open Hardware!

Lex Kravitz4:06 PM
@Tobias Wenzel Hi! Nice to meet you!

This chat is officially over in a few minutes, everyone should hang out and keep talking though! To catch up if you're just getting here, there's a transcript posted: https://hackaday.io/event/157820-open-hardware-for-science

kelu1244:08 PM
@Lex Kravitz - I confirm that peer review publication helps with sharing open science projects, thanks to @Tobias Wenzel that help for a ultrasound module kit.

Hackaday has just launched a Journal as well: https://hackaday.io/project/28128-hackaday-journal-of-what-you-dont-know

Andre Maia Chagas4:08 PM
@Mark Sporleder and @Lex Kravitz I would also suggest to look for people who are already doing IoT, environment and sensors, even if its not underwater, join forces, you bring a new environment, they bring the community, everyone wins because it is another good open source tool.

Mark Sporleder4:08 PM
has anyone worked with patenting their device before publicly releasing it?

Andre Maia Chagas4:09 PM
you have to do it, once it is publicly out, you cannot patent it anymore.

Tobias Wenzel4:09 PM
Absolutely. There are a few Hackaday projects preparing manuscripts or currently submitting to the Journal of Open Hardware. I have already seen some really awesome drafts. But we would like to see much more. Why not take academic credit for the amazing work that is being done on instrumentation and models. We review the documentations also to make sure it is really actionable for other readers/scientists.

Andre Maia Chagas4:10 PM
plus, maybe this is the wrong audience to ask? considering the whole "open hardware for science motto"? :P

Mark Sporleder4:10 PM
@Andre Maia Chagas Good point. Have very long list of contacts am looking towards networking and joining forces with.

Andre Maia Chagas4:10 PM
@mark spor

@Tobias Wenzel can we connect on email? sophi@hackaday.com

Tobias Wenzel4:11 PM
@Mark Sporleder Publications are an alternative route to protect intellectual property (instead of patents). Publications are assumed public knowledge and no one else can prevent you from working and selling this published information.

Andre Maia Chagas4:11 PM
@Mark Sporleder Probably you already know, but make sure to check public lab, and safecast

Lex Kravitz4:12 PM
@Tobias Wenzel Would you consider setting up a way to submit directly from Hackaday? Like BioRXIV is doing with many journals? One challenge with publishing is that it's a lot of work to prepare a manuscript for an uncertain reward. If there was a way to know that, given sufficient quality of presentation, etc, etc, the work would be published in your journal that may drive people to submit

Thomas Shaddack4:12 PM
@Tobias Wenzel thought. perhaps as important as open hardware, or sometimes even more, could be protocols. step by step methods for testing procedures, e.g. for measuring material properties (strength, electrical properties, biocompatibility...), with easily available materials/tools.

I have to jump off. Thank you @Lex Kravitz for hosting a great chat!

Andre Maia Chagas4:13 PM
@Tobias Wenzel but at the same time they don't prevent others from doing the same with the data in your publication (which I'm guessing is what Mark is looking for? some kind of protection?)

An interesting read for alternative models of business are in https://www.sparkfun.com/products/13220 which is super good read

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