You are going to need some parts for this. I 3d printed a body and included the files here. This will change in the future as the robot becomes more human friendly.
Arduino Motor Shield
DC converter module--this $9.00 module provides a steady output (you select from 1.25 to 26 volts) based on an input of 3.5 to 28 volts. The output remains the same even as the input changes.
Optional: Digital voltmeter to monitor capacitors
Set the output voltage on the dc converter to about 11 volts (this is adjusted using a small screwdriver on a multi-turn potentiometer).
Install the sketch in the Arduino. The Arduino senses current increase on the motors (ran into something) to trigger the "backup and turn" behavior.
In the future, Mato will get a skin and more personality. She will find the taco shell (charging station) and quickly fill up before returning to companion duty.Charging right now is accomplished using a bench top power supply set at 12.8 volts and 4.5 amps. The supply will deliver 4.5 amps until the ultracapacitor reaches 12.8 volts. I'm being conservative (5 capacitors times 2.7 volts equals 13.5 volts) and will probably test the limits later.