January 20, 2016: I just can't stay away from this project for some reason. I realized the board was way too big so I put the boost circuit on the bottom side and shrunk the board by almost a factor of 2. I think it's done now. I still called it Rev 3 because I had forgotten I did a full rev roll when I fixed the via problem before. I'm not going to re-revision it now :)
So Rev 3 files are on this project page, along with the BOM. I haven't tested this yet, but I'm pretty sure it should be good. I'll test it at some point soon and report back.