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Low cost and open source bio-engineering kit

Arduino based kit to start bio-engineering

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pH meter, thermometer, spectrophotometer, data logging on an Arduino based shield. 3-D printed stand, multiple probe/sensor arm and a micro hotplate with digital temperature control

What is bio-engineering?

Bioengineering is the application of engineering and science principles to tissues, cells and molecules.

What can you do with the bio-engineering basic kit?

The kit contains two main items: An Arduino Mega shield with 3-D printed stand and probe arm to measure pH, temperature, optical density of solutions or growth media and record data over time on a SD card for further processing and a micro hot plate with digital temperature control to grow bacteria or molds at a constant temperature or trigger chemical reactions at a certain temperature.

Arduino Mega shield design

Fig. 1 Shield schematic for the Arduino Mega to measure pH, temperature and optical density of solutions or growth media and record data over time on a SD card

Fig. 2 PCB layout

Fig. 3 PCB

Fig. 4 Populated PCB

Fig. 5 Laser sintered joystick extension

pH meter

pH electrode specification

Type: 201W

Measurement range: 0 - 14 pH

Measurement temperature: 0 - 80 ℃

Zero point: 7 ± 0.25 pH

Alkali error: ≤ 15 mV

Noise: < 0.5 mV

Theoretical percentage slope: ≥ 98.5 %

Internal resistance: ≤ 250 MΩ

Response time: ≤ 1 min

Max. dipping depth: 100 mm

Cable length: approx. 70 cm

Connector: BNC

Fig. 1 pH probe 201W

pH meter theory

Fig. 1 Schematic drawing of a pH electrode

The Nernst equation expresses the electrical potential of a electrochemical cell at non-standard state conditions and at any time during the electrochemical cell's reaction and is given by

where

E = Electric potential of the pH electrode

Eo = Standard electric potential of the reference electrode

R = Ideal gas constant ≈ 8.314 V⋅C / (Kmol)

T = Absolute temperature = 298.15 K at 25 °C

n = Valence (number of charges on ion) = 1 for H+

F = Faraday constant ≈ 96490 C / mol

Q = Reaction quotient of the species involved

ln(Q) can be expressed as a logarithm to the base 10 by

and log10(Q) can be expressed in terms of the hydrogen ion activity by -log10(aH+) which is the pH of a aqueous solution.

Hence equation (1) becomes

At 25 °C and assuming a zero potential of the reference electrode, equation (3) may now be written as follows:

Solving for pH:

If we assume the characteristics of an ideal pH electrode, we should have the following voltage outputs of the electrode:

The pH electrode signal is passed through a low-pass filter (R14, C12, see schematic) wit a cut-off frequency of

The op-amp U1 is configured as a non-inverting amplifier with adjustable gain (R17) and active low-pass filter. The output voltage of op-amp U1 is given by

The resistance of Rf and Rg depends on the wiper position of the trimming potentiometer R17.

The op-amp U2 is configured as summing amplifier to accomplish level shifting and output scaling to fit the 5 V input ADC. The summing amplifier sums the two (weighted) voltages:

If we adjust the gain of the non-inverting amplifier for example to 4.8, we have follwing output voltages on U1:

The summing amplifier translates the voltages then to:

Hence


pH electrode precautions

  • Always store the electrode in the pH meter storage solution recommended by the manufacturer and never in water even it it is deionized water. A pH meter storage solution contains salts that help the pH meter to recover.
  • Never let the electrode dry out.
  • Thoroughly rinse the electrode with distilled or deionized water, after removing from the storage solution, between measuring samples or calibration buffers and before returning to the storage solution. A quick flick with the wrist also removes the excess water from the probe.
  • Only measure cooled samples.
  • Move the electrode around in the sample. This avoids localized pH changes caused by the acidic nature of the probe.
  • Don't scratch or rub the glass bulb. It is coated with a sensitive layer that is integral to its function and it's rather fragile.

pH electrode/sensor arm

The pH electrode/sensor arm will move in almost any direction and will hold up to three probes/sensors safely. First I designed the stand for the pH electrode/sensor arm.

Fig. 2 pH electrode/sensor... Read more »

  • 1
    Step 1

    Micro hot plate assembly

    Remove protective film and glue the heating foil centered on the bottom of the laser cut stainless steel disc:

  • 2
    Step 2

    Solder 22 AWG flexible stranded core wires (20 cm long) onto leads of DS18B20. Use heat-shrink tubing to insulate connections:

  • 3
    Step 3

    Solder a 3-pin female pin header (2.54 mm spacing) onto the other ends of the wires. Use heat-shrink tubing to insulate connections. Move heat-shrink tubing onto wires, before you solder!

View all 4 instructions

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Discussions

schiaucu wrote 01/06/2016 at 00:26 point

Hello, I am interested to build an spectrometer. What do you use as circuit parts? The tiny bug there on the shield is a spectrometer right?

  Are you sure? yes | no

marble wrote 11/29/2015 at 00:24 point

Hey,
just a little off the topic.
Can you provide the cad file(s) for the four-way-switch knob?
Preferably OpenSCAD
We tried to design our own, but it always gets loose.

  Are you sure? yes | no

M. Bindhammer wrote 11/29/2015 at 07:10 point

Hi, I will release all files later when everything is working and fits well. 

  Are you sure? yes | no

Est wrote 11/28/2015 at 07:36 point

hello, I saw your project featured and I wanted to say that I made a ph meter too

https://hackaday.io/project/7310-phmeter

  Are you sure? yes | no

M. Bindhammer wrote 11/29/2015 at 07:08 point

Thanks for the link. I will take a look

  Are you sure? yes | no

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